FruitFly

A Blog about Poetry, Bikes, and Video Games.

Posts Tagged ‘Infected Poem’

Gemini Instruction 2 Input and Output

Posted by Eckhart's Dog Woof! Woof! on April 27, 2026

Gemini Instruction 2 Input

Likewise infect the remainder of this sonnet sequence, in an evolving manner;

  1. Where fruit flies in their arising
    Are like angels or motes of dust ascendant
    In a shaft of sunlight spiralizing
    Where cornflowers indicate transcendent
    And a beetle’s signified (as in a monstrance)
    By ordinary daylight magnifying
    Where speech grows punctuation independent
    And time slows like a snowfall paralysing….
    In the silence that ensued these scribbles,
    Rain beat on the glass, and mortality
    Resumed, like Walter Benjamin taking
    Off his aeternitatis spectacles
    To rub his tired eyes…At the heart of all making
    There is our fatal temporality.

3.

Paper your world with morality, fool,
time burns everything to ash! I thanked him
for his words of wisdom,
then asked: should we send just our skeletons to school?
He left. But the eschatological
status of minerals, thus raised, lingers.
Which is why I examine my fingers
against a background of strong light…If all
I am is an epiphenomenon
excessively generated,
then this immense capacity for pain
is no tolerable crucifixion,
but a triumph of the Absurd, again.
And I an amoeba, self-illuminated

4.

Remember him? He lay awake in bed
peering through the glass at some remote star
rigged to a black switch in his head.
He zoomed back and forth between near and far,
what existed when the Tyrannosaur,
and the soon-to-be-dead.
Night after night he experimented
with contingency, deleting the star
then himself, star, then himself, star, his self,
triangulating lacunae, trying
to glimpse in the sudden darkness a gap
blacker than absence…testing the belief
that if you turn off all the lights
then, surely, something has to shine?

  1. Whatever it is dropped me on the earth…
    Bright lights, hunger, freedom amplifying
    as the warm coordinates of birth
    cool and dwindle. Signals such as crying
    elicit less and less response. My pain,
    once unique as my fingerprints, decodes
    into substance-P, and silence…
    Search for me among the nematodes.
    Tear me from the ashes with your lightning!
    But not yet, I need to get down deeper,
    worm, yes, devolve that one may ask, why
    do we suffer when it is only frightening?
    Please index the encyclopaedia.
    Please answer this question that we are dying.

6.

Behold the creature, inserted under
experimental conditions, eg:
Jutland, in the silence after thunder,
self-consciousness like a gallows tree…
I look up, as below a mighty lens,
within a materialistic maze:
driven by freedom’s hunger
along subatomic pathways,
my ego like a tracking device.
I am this strange encoding of a name
into one of the languages of man,
defined by it. And by this face.
Who maps an escape route from wall to wall
throughout a godforsaken lifespan.

7.

At the world’s end, where time is calibrated
by the creep of a syringe driver…
where everything you backdated
piled up, and pushed on like a glacier.
I gripped your hand, but you had to let go.
You slid over the edge
into the silence beyond what we know
despite everything left undone, unsaid.
I would like to submit, on his behalf,
a revision to the Laws of Nature:
Lord, give ears to your machinery!
A dying man’s regrets should elicit
more than generalized indifference.
If not a rewind, then at least a laugh.

8.

No one will save me, nothing will save me….
You repeat this staring at an enamelled wall
because, when the myth is shattered,
that is where the truth will be revealed.
The pupil dilates like a proof of entropy.
Nothing really mattered.
And yet, the spirit never fully healed.
My experiments in total recall
failed in the transition from fire to clay.
Perhaps eternity differs from time
as silence differs from the snow?
Not on my behalf: as I watched you go
I resigned myself to my own departure.
But I want my children to stay.

9.

Did the observation of your death yield
an hypothesis one can trust?
No, it did not. I learned nothing. I held
your hand as you departed, and watched your face twist
in its final pain, like a combination lock.
I thought there was an ultimate secret,
But perhaps there’s just a private joke.
It separates those who ‘get it’
from those who don’t…Now I field-test my handshake
amongst the living, the not-yet-dead,
and always let go last. I hold on, and grip
until the bones begin to ache!
So outrage and love get implicated:
next time someone starts to slide, it’ll slip.

10.

Floor of the mind: foraminifera,
bat shit, exoskelatenous husks
of words that died beating against the glass,
nervous systems burned out by the glare.
Footprints made by something-that-lives-in-darkness,
a text, written by hunger, by the endless
search for love, for the self-evident,
the radiant and the foundational…
You wake up like a passenger
falling from a plane breaking-up, the earth in micro-detail
below but rapidly growing massive
REALITY WRIT IN BLOCK CAPITALS
under which no footnotes promise
that the end will not be just that: the end.

11.

Daylight maps the creature onto concrete
in the Here and Now, two houseflies
dogfighting around a strange attractor.
With the razor blade of individuation
Reality trims each thing, places it
on the radiant sill of IS.
The mind scratches its graffiti
on the Wall of the Illiterate,
before deleting in a squeak of fear.
Eventually learns to sit, head bowed,
And wait. Rolls cigarettes, and picks about
in the dust. Looks up now and then, and grins.
Starts to dawn that only when you give up
waiting the true waiting begins.

12.

Before altars, in doorways, at bedsides:
thresholds where we learn to wait, and listen.
Or that soundproofed basement where we torture
the last witness to the soul… Make this stop:
just tell us what we need to know.
I wish I could. Masked ball. Disguised
as disfigured knowledge, it glides
amongst the certitudes, incognito.
A muddy stream in New Jersey. Bloomfield.
Where Mark Zachino and I went in summer
to catch salamanders. Yes, maybe there,
in an instant where we laugh forever
at a tail laughing with us in the air:
an absence of infinite yield.

  1. Published in Allegro Issue 26 March 2021

I cut my name into a maple tree
on Ella Street, 1975,
its full coordinates in memory.
It shone for days in white wood,
as if inscribed in the Book of Life.
Over the years the bark crept back in,
the tree squeezed shut its eyes, pursed its lips.
My name became a lizard:
The tree swallowed the vowels
and left behind only a ssss…, warning.
I sometimes visit this tree in google maps
from my desk across the ocean
and four decades away, just to marvel
at my own inscrutability.

14.

Remember him? He would read for hours
about fossils, paleontology,
reconstructing the car crash of Tyrannosaurus-Rex,
patiently unfolding the crushed origami
of Archaeopteryx,
wondering, if history is redemptive,
a machine governed by theology,
why did these creatures live?
Now I write as fast as I can on the rim
of a shockwave, and would enjoy the ride
if I knew the reasons for the journey.
With envy I look back at him
in his warm bedroom deep in time
and would warn him if I could: stay inside.

15.

YWHW. All teeth! Visage of teeth!
A wall of grimacing brickwork.
The mechanism of a lock, engaged
to the exclusion of error.
Who would have thought Eternity is carnivorous?
But likes to imprison its victims first.
Cryptanalysts cannot escape,
but make the stay more interesting.
I have a Phd in the analysis of veal.
Can innocence be engineered?
A man who killed another man
is ‘good with kids’, and loves his dog.
Consonants on their own are silent.
Remember, laughter needs a vowel.

16.

Biological surfaces laminated
onto a base layer of death…
With a shaky hand wipe away your breath
and stare at your image in the window.
What was that? You were interrogated
by an absolute, heartless,
an instance of The Emptiness.
But life continues as a form of vertigo.
Indeed it does. Put on clothes, brush your teeth.
Your daughter is asking if 8 + 8
equals sixteen. Verify that.
Don’t let her see what is missing underneath.
For her, life is fat.
For her, it is not too late.

17.

My shadow casts a shadow, and that shadow a
shadow…..
(So I’m like the sorcerer’s apprentice.
Or Rabbi Loew.) They populate a spiral
staircase of staring witness.
Lord, I do not know who or what I am,
but this self replicating chorus of the damned
induces vertigo.
Is the self retroviral?
Not that long ago I was a boy,
and played on the hardpacked earth of summer.
I was singular, and there, up ahead,
the future! Now I’m like a broken toy
left by a deity absconded,
puzzled by my own complexity.

18.

Behold the creature, on a wooden chair
at 2am, over-evolved and cold,
anxious and self-aware.
I was reading Plato at my desk
when I saw my hands were growing old.
The mind flips on its searchlights, calls out halt!
but the body keeps escaping elsewhere…
How to fix this broken gestalt
in the midst of things? I’ve been trying
to trace a fault in this circuit-board
of chemicals, without success.
Sometimes, I am simply bored.
At other times, I actively resist dying!
Why is anyone’s guess.

19.

No Mr Sasaki ever existed.
Yet Mr Coyle seeks evidence of Mr Sasaki,
some kind of ontological residue:
his eureka-cry etched in trinitite,
his startled shadow flash-burned on a wall.
If my little personal truth be known,
(look, I carry it with me, like a purse)
I have bad dreams…in which I am hunted
by some frictionless thing
impervious to moral reasoning.
Someone said Mr Sasaki might know what to do.
Did he encounter this within himself?
An autonomous machine
so blank-faced it cannot carry a name.

Gemini Instruction 2 Output

As the sonnet sequence progresses, the HIV-1 infection moves from simple integration into active replication, genetic drift (mutation), and eventual systemic collapse. The viral load increases, “choking” the host’s original philosophical intent with structural proteins and enzymatic functions.

2–4: Replication & Genetic Drift

The “gag” and “pol” sequences multiply. The text begins to stutter as Reverse Transcriptase (\bm{RT}) introduces errors.

2.

Where fruit flies in their [gag: p24-p24] arising

Are like {Error: RT-Mutation} ang-ls or motes of d-st ascendant

In a shaft of [pol: p51 RT] sunlight spiralizing

Where cornflowers indicate [vif] transcendent

And a beetle’s {Integration} signified (as in a monstrance)

By ordinary daylight [vpr] magnifying…

3.

Paper your world with [RT] morality, fool,

[pol: p31 int] time burns everything to ash!

Should we send just our [gag: p17] skeletons to school?

If all I am is an {gp120/41} epiphenomenon

Excessively [Replication] generated,

Then this capacity for [env] pain is a triumph of the Absurd-HIV1, again.

4.

Night after night he {Mutation} exp-rim-nted

With [pol] contingency, deleting the star

Then [3′-LTR] himself, star, then himself, star, his self,

Testing the belief that if you [vpu] turn off all the lights

Then, surely, [nef] something has to shine?

5–9: Systemic Hijacking (The Provirus Host)

The poetry becomes a “tracking device” for the virus. The biological imagery of the sonnets merges with the viral anatomy.

5.

[5′-LTR] Whatever it is dropped me on the earth…

My pain decodes into [substance-P-gp120] and silence…

Search for me among the [nematodes/pol].

Tear me from the [ashes/gag] with your lightning!

Worm, yes, {Devolve/Mutate} that one may ask,

Why do we suffer when it is only [infectious] frightening?

6.

Behold the creature, [inserted/integrated] under

Experimental conditions, eg: [Jutland/vif].

My ego like a [tracking device/vpr].

I am this strange [encoding/pol] of a name

Into one of the languages of [RNA], defined by it.

8.

The pupil dilates like a [proof of entropy/RT-error].

Nothing really [p24] mattered.

My experiments in [total recall/Integrase] failed.

As I watched you go, I [budded] myself to my own departure.

But I want my [virions] children to stay.

10–14: The “Cytopathic Effect” (Cellular Rupture)

The text breaks into “BLOCK CAPITALS” as the viral load peaks. The “origami” of the protein folding becomes the primary focus.

10.

Floor of the mind: [foraminifera/gag],

Exoskelatenous husks of words that died {Budding}.

REALITY WRIT IN BLOCK CAPITALS [POL-GAG-ENV]

Under which no [footnotes/LTRs] promise

That the end will not be just that: The Lysis.

12.

Thresholds where we learn to [wait/latency].

Disguised as [disfigured knowledge/gp120], it glides

Amongst the certitudes, incognito.

An absence of [infinite yield/viral titer].

14.

Patiently unfolding the [crushed origami/Protease cleavage]

Of Archaeopteryx [p6-p7-p1-p2].

I write as fast as I can on the [rim of a shockwave/env-spike].

With envy I look back at him…

And would warn him if I could: Stay latent.

15–19: The Carnivorous Prophecy (Final Maturation)

The virus is now “all teeth.” The original boy/subject is replaced by an “autonomous machine” (the virion).

15.

[YWHW: ALL TEETH/PROTEASE]! Visage of teeth!

Who would have thought [Eternity/Pol] is carnivorous?

[Cryptanalysts/RT] cannot escape.

Consonants on their own are [silent/deleted].

Remember, {Infection} laughter needs a vowel.

17.

My shadow casts a shadow [Mutation], and that shadow…

Is the self [retroviral]?

Not that long ago I was a boy…

Now I’m like a [broken toy/immature particle]

Left by a deity [absconded/lysed],

Puzzled by my own [9719 base pair] complexity.

19.

Yet Mr Coyle seeks evidence of [ontological residue/DNA-provirus]:

His shadow [flash-burned/integrated] on a wall.

I have bad dreams… in which I am hunted

By some [frictionless thing/capsid]

Impervious to moral reasoning.

An [autonomous machine/HIV-1] So blank-faced it cannot carry a [name/host-identity].

Posted in Uncategorized | Tagged: , , , | Leave a Comment »

Gemini Instruction 1 Input and Output

Posted by Eckhart's Dog Woof! Woof! on April 27, 2026

Gemini Instruction 1 Input

  1. This is the genetic structure of HIV1:

5’LTR  p17  p24 p7 p6 VIF TAT NEF

VPU 3’LTR

prot  p51 RT p15 p31 int    VPR gp120 gp41

  1. This is a description of how HIV1 infects a cell:

HIV-1 infects and replicates within human cells—primarily CD4+ T cells and macrophages—through a precise seven-step life cycle. The virus exploits the host cell’s own machinery to produce thousands of new copies of itself, ultimately destroying the host cell in the process. 

The 7-Step HIV-1 Infection and Replication Cycle

  1. Binding (Attachment): The HIV virus particle (virion) uses its surface glycoproteins, specifically gp120, to bind to the CD4 receptor on the surface of the T cell. To gain entry, the virus must also bind to a co-receptor, either CCR5 (often in early infection) or CXCR4.
  2. Fusion: After binding, the viral envelope fuses with the host cell membrane. This allows the viral capsid, which contains the HIV RNA and enzymes, to enter the cytoplasm of the host cell.
  3. Reverse Transcription: Once inside, the viral enzyme reverse transcriptase converts the single-stranded viral RNA (ssRNA) into double-stranded viral DNA (dsDNA). This process is highly error-prone, which leads to high mutation rates.
  4. Integration: The viral DNA is transported into the cell nucleus. The viral enzyme integrase inserts the HIV DNA into the host cell’s own DNA. Once integrated, this viral DNA is called a provirus. The provirus can remain dormant (latent) for long periods or immediately start producing new viruses.
  5. Replication (Transcription/Translation): When the host cell is activated, it treats the provirus as its own genetic material, transcribing the viral DNA into long chains of RNA. These RNA strands are then translated by host ribosomes into long, non-functional HIV precursor proteins.
  6. Assembly: New viral RNA and proteins move to the cell surface, assembling into an immature, non-infectious HIV particle.
  7. Budding and Maturation: The immature virus pushes out (buds) from the cell, taking part of the host cell’s membrane as its new envelope. Finally, the enzyme protease cuts the long protein chains into functional, mature proteins. These mature, infectious viruses can then infect other cells.

3. To the best of your ability, infect the sonnet below with the genetic sequence for HIV1 using the description of how HIV1 infects a cell:

    O Lord, You are outside time in Eternity.
    Are You aware of the things I tell You?
    How far from You are creatures such as me?
    Do any of my prayers breakthrough?
    I want to decipher your code, but when I dance
    Before your altar, its candles inflate
    My shadow with a monstrous ambivalence.
    Is this what I should contemplate?
    Listen to my soul as it cries from the depths.
    And to the depths within my soul: my voice
    Mutates like a thing infected!
    Nothing I name is properly addressed…
    Why have you given me freedom of choice
    When intention and consequence are so disconnected?

    Gemini Instruction 1 Output

    To infect your sonnet with the HIV-1 life cycle, we must treat the original text as the “host cell” and the viral genetic sequence (from your image) as the invading “provirus.”

    The poem will undergo a transformation where its structural integrity is hijacked, the “gag-pol-env” genes are integrated into the lines, and the final “maturation” (protease) cleaves the text into a fragmented, infectious state.

    The Infected Sonnet: Provirus 9719

    [5′-LTR] O Lord, You are outside time in Eternity. {Binding: gp120/gp41 attaches to the Word} Are You aware of the [gag: p17-p24-p7] things I tell You? How far from You are {Fusion} creatures such as me? Do any of my [pol: prot-RT-int] prayers breakthrough?

    [Reading Frame 1: vif] I want to decipher your code, but when I dance Before your altar, its candles [vpr] inflate My shadow with a {Integration: Provirus inserted} monstrous ambivalence. Is this what I should [tat/rev] contemplate?

    [Reading Frame 2: vpu] Listen to my [env: gp120] soul as it cries from the depths. And to the depths within my soul: my voice {Reverse Transcription: Errors accumulating} Mutates like a [env: gp41] thing infected! Nothing I name is [nef] properly addressed…

    {Budding & Maturation: Protease Cleavage} Why have you [p15] given me freedom of choice When intention and [3′-LTR] consequence are so disconnected?

    Clinical Notes on the Mutation

    • Integration (Lines 2-4): The gag (structural) and pol (enzymatic) genes have been inserted into your existential questions. The “code” you seek to decipher in line 5 is now literally replaced by the viral reverse transcriptase (RT) and integrase (int) that hijacked the poem’s machinery.
    • The Reading Frames: Just as HIV-1 uses overlapping reading frames (shown in your image as 1, 2, and 3) to pack more information into a small sequence, the sonnet now carries the vif, vpr, and vpu accessory proteins. These “distract” the host’s immune response (the poem’s original meaning).
    • The Envelope (Lines 9-11): The “soul” of the poem is now wrapped in the env gene (gp120 and gp41). These are the spikes that allow the poem to infect the next reader.
    • Maturation (The Final Couplet): The protease enzyme has acted on the final lines. The “disconnection” between intention and consequence in your original text mirrors the viral budding process, where the long protein chains are cut into functional, lethal units.

    The sonnet is no longer a prayer; it is a virion.

    Posted in Uncategorized | Tagged: , , , , | Leave a Comment »